Publications
2024
N. Deutschmann*, A. Pelissier*, A. Weber, S. Gao, J. Bogojeska and M. R. Martinez. Do domain-specific protein language models outperform general models on immunology-related tasks? ImmunoInformatics. (2024)
10.1016/j.immuno.2024.100036
A. Pelissier*, T. Laragione*, Carolyn Harris, M. R. Martinez and P. S. Gulko. Gene Network Analyses Identifies Co-regulated Transcription Factors and BACH1 as a Key Driver in Rheumatoid Arthritis Fibroblast-like Synoviocytes. Frontier in immunology (under review). (2024)
10.1101/2023.12.28.573506
A. Pelissier, M. Slav, N. Beerenwinkel and M. R. Martinez. Practical and Scalabale Simulations of Non-Markovian Stochastic Processes. Proceedings of the National Academy of Sciences (under review). (2024)
10.48550/arXiv.2212.05059
2023
J. Taylor, A. Pélissier, K. Mochizuki, K. Hashimoto, Y. Kumamoto, Y. Harada, K. Fujita, T. Bocklitz, and T. Komatsuzaki. Correction for Extrinsic Background in Raman Hyperspectral Images. Analytical Chemistry. (2023)
10.1021/acs.analchem.3c01406
A. Pelissier*, M. Stratigopoulou*, N. Donner, E. Dimitriadis, R. J. Bende, J. E. Guikema, M. R. Martinez, and C. J. van Noesel. Convergent Evolution and B-Cell Recirculation in Germinal Centers in a Human Lymph Node. Life Science Alliance 6(11). (2023)
10.26508/lsa.202301959
A. Pelissier*, S. Luo*, M. Stratigopoulou, J. E. Guikema, and M. R. Martinez. Exploring the impact of clonal definition on B-cell diversity: implications for the analysis of immune repertoires. Frontiers in Immunology. (2023)
10.3389/fimmu.2023.1123968
2020
A. Pelissier, Y. Akrout, K. Jahn, J. Kuipers, U. Klein, N. Beerenwinkel and M. Rodríguez Martínez, Computational Model Reveals a Stochastic Mechanism behind Germinal Center Clonal Bursts. Cells, 9.6 (2020).
10.3390/cells9061448
2019
A. Pelissier, K. Hashimoto, K. Mochizuki, Y. Kumamoto, J. N. Taylor, K. Tabata, JE. Clement, A. Nakamura, Y. Harada, K. Fujita and T. Komatsuzaki. Intelligent Measurement Analysis on Single Cell Raman Images for the Diagnosis of Follicular Thyroid Carcinoma. arXiv. (2019).
arxiv.org/abs/1904.05675
A. Pelissier, A. Nakamura, K. Tabata. Feature selection as Monte-Carlo Search in Growing Single Rooted Directed Acyclic Graph by Best Leaf Identification. Proceedings of the 2019 SIAM International Conference on Data Mining, 450-458. (2019).
10.1137/1.9781611975673.51
arxiv.org/abs/1811.07531
Theses
Stochastic Modeling of the Humoral Immune Response: A Multi-scale Challenge – Supervised by Maria Rodriguez Martinez and Niko Beerenwinkel
PhD Thesis, IBM Research & ETH Zurich, Switzerland (June 2023)
Feature Selection as Reinforcement Learning Applied to Raman Spectra for Cancer Diagnosis – Supervised by Atsuyoshi Nakamura
M. S. Thesis (2nd year), Imperial University of Hokkaido, Sapporo, Japan (June 2018)
Study of High Harmonic Generation in High Repetition Rate Systems – Supervised by David Jones
Predoctoral Research Program Thesis, University of British Columbia, Vancouver, Canada (June 2017)
Impact of Piezoelectric Effects on Nitride-III Nanobeam Optical Properties – Supervised by Ian Michael Rousseau, Directed by Raphael Butte and Nicolas Grandjean
M. S. Thesis (1rst year), École Polytechnique Fédérale de Lausanne, Switzerland (July 2016)